3D structure

PDB id
9MNC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 80S ribosome bound to small molecule SW393071
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
UGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9MNC|1|L5|U|4321
9MNC|1|L5|G|4322
9MNC|1|L5|A|4323
9MNC|1|L5|A|4324
9MNC|1|L5|A|4325
9MNC|1|L5|G|4326

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L8
Large ribosomal subunit protein uL18
Chain L9
5S ribosomal RNA; 5S rRNA
Chain LT
Large ribosomal subunit protein eL21
Chain Le
Large ribosomal subunit protein eL42

Coloring options:

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