HL_9MNC_056

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MNC_056 not in the Motif Atlas

Homologous match to HL_8GLP_064

Geometric discrepancy: 0.043

The information below is about HL_8GLP_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9MNC|1|L5|U|4321
9MNC|1|L5|G|4322
9MNC|1|L5|A|4323
9MNC|1|L5|A|4324
9MNC|1|L5|A|4325
9MNC|1|L5|G|4326

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

Large ribosomal subunit protein uL18

Chain L9

5S ribosomal RNA; 5S rRNA

Chain LT

Large ribosomal subunit protein eL21

Chain Le

Large ribosomal subunit protein eL42