HL_9MNC_064

3D structure

PDB id

9MNC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to small molecule SW393071

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9MNC|1|L5|G|4694, 9MNC|1|L5|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MNC|1|L5|C|4688
9MNC|1|L5|PSU|4689
9MNC|1|L5|G|4690
9MNC|1|L5|A|4691
9MNC|1|L5|A|4692
9MNC|1|L5|C|4693
9MNC|1|L5|G|4694
9MNC|1|L5|C|4695
9MNC|1|L5|C|4696
9MNC|1|L5|U|4697
9MNC|1|L5|C|4698
9MNC|1|L5|U|4699
9MNC|1|L5|A|4700
9MNC|1|L5|A|4701
9MNC|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6

Chain LY

Large ribosomal subunit protein uL13

Chain Lo

Large ribosomal subunit protein eL40