3D structure

PDB id
9MNC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 80S ribosome bound to small molecule SW393071
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
CCCCUUCGCGGGGG
Length
14 nucleotides
Bulged bases
9MNC|1|S2|U|197, 9MNC|1|S2|U|198
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9MNC|1|S2|C|193
9MNC|1|S2|C|194
9MNC|1|S2|C|195
9MNC|1|S2|C|196
9MNC|1|S2|U|197
9MNC|1|S2|U|198
9MNC|1|S2|C|199
9MNC|1|S2|G|200
9MNC|1|S2|C|201
9MNC|1|S2|G|202
9MNC|1|S2|G|203
9MNC|1|S2|G|204
9MNC|1|S2|G|205
9MNC|1|S2|G|206

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SI
Small ribosomal subunit protein eS8

Coloring options:

Copyright 2026 BGSU RNA group. Database contents are licensed under Creative Commons Attribution 4.0 International (CC BY 4.0). Page generated in 0.1075 s