HL_9MOR_103
3D structure
- PDB id
- 9MOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Damaged 70S ribosome with PrfH bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 9MOR|1|5|C|15, 9MOR|1|5|C|16, 9MOR|1|5|U|17, 9MOR|1|5|G|18, 9MOR|1|5|G|19, 9MOR|1|5|U|20, 9MOR|1|5|A|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9MOR_103 not in the Motif Atlas
- Homologous match to HL_5UD5_001
- Geometric discrepancy: 0.1872
- The information below is about HL_5UD5_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- tRNA D-loop
- Motif group
- HL_89167.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
9MOR|1|5|C|12
9MOR|1|5|A|13
9MOR|1|5|G|14
9MOR|1|5|C|15
9MOR|1|5|C|16
9MOR|1|5|U|17
9MOR|1|5|G|18
9MOR|1|5|G|19
9MOR|1|5|U|20
9MOR|1|5|A|21
9MOR|1|5|G|22
Current chains
- Chain 5
- P-tRNA, E-tRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- Large ribosomal subunit protein uL5
Coloring options: