HL_9MQ4_040

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

9MQ4|1|1|A|1614, 9MQ4|1|1|A|1616, 9MQ4|1|1|6MZ|1618

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MQ4_040 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.1008

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9MQ4|1|1|C|1612
9MQ4|1|1|G|1613
9MQ4|1|1|A|1614
9MQ4|1|1|C|1615
9MQ4|1|1|A|1616
9MQ4|1|1|C|1617
9MQ4|1|1|6MZ|1618
9MQ4|1|1|G|1619

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein uL22

Chain d

50S ribosomal protein L34