HL_9MQ4_055

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MQ4_055 not in the Motif Atlas

Homologous match to HL_9DFE_053

Geometric discrepancy: 0.1507

The information below is about HL_9DFE_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MQ4|1|1|G|2303
9MQ4|1|1|G|2304
9MQ4|1|1|U|2305
9MQ4|1|1|C|2306
9MQ4|1|1|G|2307
9MQ4|1|1|G|2308
9MQ4|1|1|A|2309
9MQ4|1|1|C|2310
9MQ4|1|1|A|2311
9MQ4|1|1|U|2312
9MQ4|1|1|C|2313

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL5