HL_9MQ4_082

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAGCC(G7M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MQ4_082 not in the Motif Atlas

Homologous match to HL_4LFB_033

Geometric discrepancy: 0.1249

The information below is about HL_4LFB_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9MQ4|1|2|C|522
9MQ4|1|2|A|523
9MQ4|1|2|G|524
9MQ4|1|2|C|525
9MQ4|1|2|C|526
9MQ4|1|2|G7M|527

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain A

Peptide chain release factor H

Chain q

Small ribosomal subunit protein uS12