HL_9MQ4_106

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

9MQ4|1|6|C|16, 9MQ4|1|6|C|17, 9MQ4|1|6|U|18, 9MQ4|1|6|G|19, 9MQ4|1|6|G|20, 9MQ4|1|6|U|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MQ4_106 not in the Motif Atlas

Homologous match to HL_7EQJ_004

Geometric discrepancy: 0.2281

The information below is about HL_7EQJ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9MQ4|1|6|C|13
9MQ4|1|6|A|14
9MQ4|1|6|G|15
9MQ4|1|6|C|16
9MQ4|1|6|C|17
9MQ4|1|6|U|18
9MQ4|1|6|G|19
9MQ4|1|6|G|20
9MQ4|1|6|U|21
9MQ4|1|6|A|22
9MQ4|1|6|G|23

Current chains

Chain 6

P-tRNA, E-tRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA