HL_9MQ4_108

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MQ4_108 not in the Motif Atlas

Homologous match to HL_5B63_004

Geometric discrepancy: 0.2965

The information below is about HL_5B63_004

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

9MQ4|1|6|G|54
9MQ4|1|6|U|55
9MQ4|1|6|U|56
9MQ4|1|6|C|57
9MQ4|1|6|A|58
9MQ4|1|6|A|59
9MQ4|1|6|A|60
9MQ4|1|6|U|61
9MQ4|1|6|C|62

Current chains

Chain 6

P-tRNA, E-tRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA