HL_9MR4_038

3D structure

PDB id

9MR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC: Ribosome nascent chain complex(Oxa1L)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

9MR4|1|5|U|2530, 9MR4|1|5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MR4_038 not in the Motif Atlas

Homologous match to HL_9PN5_034

Geometric discrepancy: 0.0899

The information below is about HL_9PN5_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.4

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

18

Unit IDs

9MR4|1|5|G|2523
9MR4|1|5|U|2524
9MR4|1|5|U|2525
9MR4|1|5|C|2526
9MR4|1|5|A|2527
9MR4|1|5|G|2528
9MR4|1|5|A|2529
9MR4|1|5|U|2530
9MR4|1|5|C|2531
9MR4|1|5|C|2532

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

Large ribosomal subunit protein eL19

Chain X

eL23

Chain g

60S ribosomal protein L34