HL_9MTP_054
3D structure
- PDB id
- 9MTP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CGCAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9MTP_054 not in the Motif Atlas
- Geometric match to HL_9DFE_054
- Geometric discrepancy: 0.0524
- The information below is about HL_9DFE_054
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
9MTP|1|1A|C|2324
9MTP|1|1A|G|2325
9MTP|1|1A|C|2326
9MTP|1|1A|A|2327
9MTP|1|1A|A|2328
9MTP|1|1A|G|2329
9MTP|1|1A|G|2330
9MTP|1|1A|G|2331
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1G
- 50S ribosomal protein L5
- Chain 1Q
- 50S ribosomal protein L16
- Chain 1x
- Transfer RNA; tRNA
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