HL_9MTP_094

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUUCGGC

Length

7 nucleotides

Bulged bases

9MTP|1|1a|U|1136, 9MTP|1|1a|C|1137

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTP_094 not in the Motif Atlas

Geometric match to HL_4LFB_026

Geometric discrepancy: 0.3286

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

9MTP|1|1a|G|1134
9MTP|1|1a|U|1135
9MTP|1|1a|U|1136
9MTP|1|1a|C|1137
9MTP|1|1a|G|1138
9MTP|1|1a|G|1139
9MTP|1|1a|C|1140

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains