HL_9MTP_096
3D structure
- PDB id
- 9MTP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GGCAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9MTP_096 not in the Motif Atlas
- Geometric match to HL_4V9F_065
- Geometric discrepancy: 0.0934
- The information below is about HL_4V9F_065
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
9MTP|1|1a|G|1265
9MTP|1|1a|G|1266
9MTP|1|1a|C|1267
9MTP|1|1a|A|1268
9MTP|1|1a|A|1269
9MTP|1|1a|C|1270
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1m
- 30S ribosomal protein S13
- Chain 1s
- 30S ribosomal protein S19
- Chain 1u
- 30S ribosomal protein Thx
Coloring options: