HL_9MTP_149

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

9MTP|1|2A|C|2145, 9MTP|1|2A|C|2146

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTP_149 not in the Motif Atlas

Geometric match to HL_5J7L_030

Geometric discrepancy: 0.2868

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9MTP|1|2A|C|2143
9MTP|1|2A|U|2144
9MTP|1|2A|C|2145
9MTP|1|2A|C|2146
9MTP|1|2A|G|2147
9MTP|1|2A|G|2148

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2k

30S ribosomal protein S11