HL_9MTP_164

3D structure

PDB id

9MTP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9MTP|1|2A|G|2751, 9MTP|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTP_164 not in the Motif Atlas

Geometric match to HL_9DFE_064

Geometric discrepancy: 0.0934

The information below is about HL_9DFE_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9MTP|1|2A|C|2745
9MTP|1|2A|U|2746
9MTP|1|2A|G|2747
9MTP|1|2A|A|2748
9MTP|1|2A|A|2749
9MTP|1|2A|A|2750
9MTP|1|2A|G|2751
9MTP|1|2A|C|2752
9MTP|1|2A|A|2753
9MTP|1|2A|U|2754
9MTP|1|2A|C|2755
9MTP|1|2A|U|2756
9MTP|1|2A|A|2757
9MTP|1|2A|A|2758
9MTP|1|2A|G|2759

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6