HL_9MTQ_103
3D structure
- PDB id
- 9MTQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- G(5MU)(PSU)CGACUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9MTQ_103 not in the Motif Atlas
- Geometric match to HL_4YYE_003
- Geometric discrepancy: 0.1043
- The information below is about HL_4YYE_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9MTQ|1|1x|G|53
9MTQ|1|1x|5MU|54
9MTQ|1|1x|PSU|55
9MTQ|1|1x|C|56
9MTQ|1|1x|G|57
9MTQ|1|1x|A|58
9MTQ|1|1x|C|59
9MTQ|1|1x|U|60
9MTQ|1|1x|C|61
Current chains
- Chain 1x
- P-site Peptidyl-tRNA fMEAAAKC-tRNAcys RNA-part
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1G
- 50S ribosomal protein L5
- Chain 1Q
- 50S ribosomal protein L16
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