HL_9MTQ_114

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

9MTQ|1|2A|G|329, 9MTQ|1|2A|A|330, 9MTQ|1|2A|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTQ_114 not in the Motif Atlas

Geometric match to HL_9DFE_011

Geometric discrepancy: 0.0859

The information below is about HL_9DFE_011

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

9MTQ|1|2A|G|327
9MTQ|1|2A|U|328
9MTQ|1|2A|G|329
9MTQ|1|2A|A|330
9MTQ|1|2A|A|331
9MTQ|1|2A|A|332
9MTQ|1|2A|G|333
9MTQ|1|2A|C|334
9MTQ|1|2A|C|335

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24