HL_9MTQ_157

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

9MTQ|1|2A|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTQ_157 not in the Motif Atlas

Geometric match to HL_9DFE_057

Geometric discrepancy: 0.066

The information below is about HL_9DFE_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9MTQ|1|2A|C|2404
9MTQ|1|2A|G|2405
9MTQ|1|2A|U|2406
9MTQ|1|2A|G|2407
9MTQ|1|2A|U|2408
9MTQ|1|2A|G|2409
9MTQ|1|2A|G|2410
9MTQ|1|2A|A|2411
9MTQ|1|2A|A|2412
9MTQ|1|2A|G|2413

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15