HL_9MTR_112

3D structure

PDB id

9MTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

9MTR|1|2A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTR_112 not in the Motif Atlas

Geometric match to HL_9DFE_009

Geometric discrepancy: 0.0788

The information below is about HL_9DFE_009

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

9MTR|1|2A|U|305
9MTR|1|2A|U|306
9MTR|1|2A|G|307
9MTR|1|2A|G|308
9MTR|1|2A|G|309
9MTR|1|2A|A|310
9MTR|1|2A|A|311
9MTR|1|2A|G|312

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Y

50S ribosomal protein L24