HL_9MTR_123

3D structure

PDB id

9MTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUGAGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTR_123 not in the Motif Atlas

Geometric match to HL_9DFE_020

Geometric discrepancy: 0.0953

The information below is about HL_9DFE_020

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9MTR|1|2A|G|712
9MTR|1|2A|G|713
9MTR|1|2A|U|714
9MTR|1|2A|G|715
9MTR|1|2A|A|716
9MTR|1|2A|G|717
9MTR|1|2A|A|718
9MTR|1|2A|C|719

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2o

30S ribosomal protein S15

Chain 2q

30S ribosomal protein S17