HL_9MTR_138

3D structure

PDB id

9MTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9MTR|1|2A|A|1616, 9MTR|1|2A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTR_138 not in the Motif Atlas

Geometric match to HL_9DFE_038

Geometric discrepancy: 0.0648

The information below is about HL_9DFE_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

9MTR|1|2A|C|1612
9MTR|1|2A|G|1613
9MTR|1|2A|A|1614
9MTR|1|2A|C|1615
9MTR|1|2A|A|1616
9MTR|1|2A|C|1617
9MTR|1|2A|A|1618
9MTR|1|2A|G|1619

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2W

50S ribosomal protein L22