3D structure

PDB id
9MTS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
UUGGGAAG
Length
8 nucleotides
Bulged bases
9MTS|1|1A|A|311
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9MTS_009 not in the Motif Atlas
Geometric match to HL_9DFE_009
Geometric discrepancy: 0.0716
The information below is about HL_9DFE_009
Detailed Annotation
T-loop with 1 bulged base
Broad Annotation
T-loop
Motif group
HL_01609.3
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
18

Unit IDs

9MTS|1|1A|U|305
9MTS|1|1A|U|306
9MTS|1|1A|G|307
9MTS|1|1A|G|308
9MTS|1|1A|G|309
9MTS|1|1A|A|310
9MTS|1|1A|A|311
9MTS|1|1A|G|312

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1Y
50S ribosomal protein L24

Coloring options:


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