HL_9MTS_096

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTS_096 not in the Motif Atlas

Geometric match to HL_4V9F_065

Geometric discrepancy: 0.0987

The information below is about HL_4V9F_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

9MTS|1|1a|G|1265
9MTS|1|1a|G|1266
9MTS|1|1a|C|1267
9MTS|1|1a|A|1268
9MTS|1|1a|A|1269
9MTS|1|1a|C|1270

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13

Chain 1s

30S ribosomal protein S19

Chain 1u

30S ribosomal protein Thx