HL_9MTT_136

3D structure

PDB id

9MTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site deacylated-tRNAcys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

9MTT|1|2A|C|1493, 9MTT|1|2A|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9MTT_136 not in the Motif Atlas

Geometric match to HL_9DFE_036

Geometric discrepancy: 0.1116

The information below is about HL_9DFE_036

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9MTT|1|2A|G|1492
9MTT|1|2A|C|1493
9MTT|1|2A|A|1494
9MTT|1|2A|A|1495
9MTT|1|2A|A|1496
9MTT|1|2A|U|1497
9MTT|1|2A|C|1498

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2