HL_9N2B_012

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9N2B|1|16|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2198

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9N2B|1|16|G|462
9N2B|1|16|U|463
9N2B|1|16|U|464
9N2B|1|16|A|465
9N2B|1|16|A|466
9N2B|1|16|U|467
9N2B|1|16|A|468
9N2B|1|16|C|469
9N2B|1|16|C|470

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains