HL_9N2B_018

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

9N2B|1|16|U|842, 9N2B|1|16|U|843, 9N2B|1|16|G|844, 9N2B|1|16|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_018 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1377

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9N2B|1|16|C|840
9N2B|1|16|C|841
9N2B|1|16|U|842
9N2B|1|16|U|843
9N2B|1|16|G|844
9N2B|1|16|A|845
9N2B|1|16|G|846

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SR

30S ribosomal protein S18