HL_9N2B_026

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9N2B|1|16|C|1136, 9N2B|1|16|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_026 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.2387

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

9N2B|1|16|G|1134
9N2B|1|16|U|1135
9N2B|1|16|C|1136
9N2B|1|16|C|1137
9N2B|1|16|G|1138
9N2B|1|16|G|1139
9N2B|1|16|C|1140

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SI

30S ribosomal protein S9