HL_9N2B_038
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAAACAUC
- Length
- 8 nucleotides
- Bulged bases
- 9N2B|1|23|A|196, 9N2B|1|23|A|199
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9N2B_038 not in the Motif Atlas
- Homologous match to HL_5J7L_139
- Geometric discrepancy: 0.07
- The information below is about HL_5J7L_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9N2B|1|23|G|194
9N2B|1|23|A|195
9N2B|1|23|A|196
9N2B|1|23|A|197
9N2B|1|23|C|198
9N2B|1|23|A|199
9N2B|1|23|U|200
9N2B|1|23|C|201
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LO
- 50S ribosomal protein L15
- Chain Lb
- 50S ribosomal protein L28
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