HL_9N2B_045

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9N2B|1|23|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_045 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0741

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9N2B|1|23|G|410
9N2B|1|23|G|411
9N2B|1|23|A|412
9N2B|1|23|C|413
9N2B|1|23|C|414
9N2B|1|23|A|415
9N2B|1|23|U|416
9N2B|1|23|C|417

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains