HL_9N2B_048

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

9N2B|1|23|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_048 not in the Motif Atlas

Geometric match to HL_9FN2_003

Geometric discrepancy: 0.1143

The information below is about HL_9FN2_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

9N2B|1|23|C|544
9N2B|1|23|U|545
9N2B|1|23|U|546
9N2B|1|23|A|547
9N2B|1|23|G|548
9N2B|1|23|G|549

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LM

50S ribosomal protein L13