HL_9N2B_049
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 9N2B|1|23|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9N2B_049 not in the Motif Atlas
- Homologous match to HL_5J7L_150
- Geometric discrepancy: 0.0629
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
9N2B|1|23|U|566
9N2B|1|23|U|567
9N2B|1|23|U|568
9N2B|1|23|U|569
9N2B|1|23|G|570
9N2B|1|23|U|571
9N2B|1|23|A|572
9N2B|1|23|U|573
9N2B|1|23|A|574
9N2B|1|23|A|575
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LC
- 50S ribosomal protein L3
- Chain LO
- 50S ribosomal protein L15
- Chain LT
- 50S ribosomal protein L20
- Chain LU
- 50S ribosomal protein L21
- Chain Lf
- 50S ribosomal protein L32
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