HL_9N2B_054
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- U(1MG)(PSU)(5MU)GAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 9N2B|1|23|5MU|747, 9N2B|1|23|A|751, 9N2B|1|23|A|752
- QA status
- Modified nucleotides: 1MG, PSU, 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9N2B_054 not in the Motif Atlas
- Homologous match to HL_7A0S_022
- Geometric discrepancy: 0.1241
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
9N2B|1|23|U|744
9N2B|1|23|1MG|745
9N2B|1|23|PSU|746
9N2B|1|23|5MU|747
9N2B|1|23|G|748
9N2B|1|23|A|749
9N2B|1|23|A|750
9N2B|1|23|A|751
9N2B|1|23|A|752
9N2B|1|23|A|753
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LC
- 50S ribosomal protein L3
- Chain LV
- Large ribosomal subunit protein uL22
- Chain Lf
- 50S ribosomal protein L32
- Chain Lh
- 50S ribosomal protein L34
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