HL_9N2B_058

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

9N2B|1|23|U|958, 9N2B|1|23|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_058 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1674

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

9N2B|1|23|PSU|955
9N2B|1|23|G|956
9N2B|1|23|C|957
9N2B|1|23|U|958
9N2B|1|23|A|959
9N2B|1|23|A|960
9N2B|1|23|C|961
9N2B|1|23|G|962

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain LP

50S ribosomal protein L16