HL_9N2B_070

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

9N2B|1|23|A|1614, 9N2B|1|23|A|1616, 9N2B|1|23|6MZ|1618

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_070 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.05

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9N2B|1|23|C|1612
9N2B|1|23|G|1613
9N2B|1|23|A|1614
9N2B|1|23|C|1615
9N2B|1|23|A|1616
9N2B|1|23|C|1617
9N2B|1|23|6MZ|1618
9N2B|1|23|G|1619

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LV

Large ribosomal subunit protein uL22

Chain Lh

50S ribosomal protein L34