HL_9N2B_072

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9N2B|1|23|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_072 not in the Motif Atlas

Homologous match to HL_9DFE_040

Geometric discrepancy: 0.0701

The information below is about HL_9DFE_040

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

9N2B|1|23|C|1691
9N2B|1|23|U|1692
9N2B|1|23|U|1693
9N2B|1|23|C|1694
9N2B|1|23|G|1695
9N2B|1|23|G|1696

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain 16

Small subunit ribosomal RNA; SSU rRNA

Chain LB

50S ribosomal protein L2