HL_9N2B_080

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

9N2B|1|23|6MZ|2030, 9N2B|1|23|A|2031, 9N2B|1|23|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_080 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0589

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

9N2B|1|23|G|2027
9N2B|1|23|U|2028
9N2B|1|23|G|2029
9N2B|1|23|6MZ|2030
9N2B|1|23|A|2031
9N2B|1|23|G|2032
9N2B|1|23|A|2033
9N2B|1|23|U|2034
9N2B|1|23|G|2035
9N2B|1|23|C|2036

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LU

50S ribosomal protein L21

Chain Lf

50S ribosomal protein L32