HL_9N2B_082

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

9N2B|1|23|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_082 not in the Motif Atlas

Homologous match to HL_9DFE_051

Geometric discrepancy: 0.0984

The information below is about HL_9DFE_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9N2B|1|23|C|2248
9N2B|1|23|U|2249
9N2B|1|23|G|2250
9N2B|1|23|OMG|2251
9N2B|1|23|G|2252
9N2B|1|23|G|2253
9N2B|1|23|C|2254
9N2B|1|23|G|2255
9N2B|1|23|G|2256

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LP

50S ribosomal protein L16

Chain La

50S ribosomal protein L27

Chain Pt

Transfer RNA; tRNA