HL_9N2B_097

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9N2B|1|23|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_097 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1401

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9N2B|1|23|G|2819
9N2B|1|23|A|2820
9N2B|1|23|A|2821
9N2B|1|23|G|2822
9N2B|1|23|A|2823
9N2B|1|23|C|2824
9N2B|1|23|G|2825
9N2B|1|23|A|2826
9N2B|1|23|C|2827

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LQ

50S ribosomal protein L17