HL_9N2B_102

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAGCCCGG(H2U)AG

Length

11 nucleotides

Bulged bases

9N2B|1|Pt|C|16, 9N2B|1|Pt|G|19, 9N2B|1|Pt|G|20, 9N2B|1|Pt|H2U|21

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2B_102 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.1107

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

9N2B|1|Pt|C|13
9N2B|1|Pt|A|14
9N2B|1|Pt|G|15
9N2B|1|Pt|C|16
9N2B|1|Pt|C|17
9N2B|1|Pt|C|18
9N2B|1|Pt|G|19
9N2B|1|Pt|G|20
9N2B|1|Pt|H2U|21
9N2B|1|Pt|A|22
9N2B|1|Pt|G|23

Current chains

Chain Pt

N-formyl-methionine initiator tRNA (fMet-tRNAfMet)

Nearby chains

Chain 23

Large subunit ribosomal RNA; LSU rRNA

Chain LE

50S ribosomal protein L5