HL_9N2C_065

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9N2C|1|23|U|1396, 9N2C|1|23|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N2C_065 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.0768

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9N2C|1|23|G|1389
9N2C|1|23|U|1390
9N2C|1|23|U|1391
9N2C|1|23|A|1392
9N2C|1|23|A|1393
9N2C|1|23|U|1394
9N2C|1|23|A|1395
9N2C|1|23|U|1396
9N2C|1|23|U|1397
9N2C|1|23|C|1398

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LW

50S ribosomal protein L23