HL_9N6V_005

3D structure

PDB id

9N6V (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.16 Å

Loop

Sequence

UAAUA

Length

5 nucleotides

Bulged bases

9N6V|1|L0|A|302, 9N6V|1|L0|U|304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N6V_005 not in the Motif Atlas

Geometric match to HL_8P9A_182

Geometric discrepancy: 0.1065

The information below is about HL_8P9A_182

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9N6V|1|L0|U|301
9N6V|1|L0|A|302
9N6V|1|L0|A|303
9N6V|1|L0|U|304
9N6V|1|L0|A|305

Current chains

Chain L0

5'ETS rRNA

Nearby chains

Chain LO

Periodic tryptophan protein 2

Chain LT

U3 small nucleolar RNA-associated protein 21

Chain LW

U3 small nucleolar RNA-associated protein 7