HL_9N6Y_003

3D structure

PDB id

9N6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N6Y_003 not in the Motif Atlas

Geometric match to HL_9DID_001

Geometric discrepancy: 0.1893

The information below is about HL_9DID_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9N6Y|1|L0|A|196
9N6Y|1|L0|G|197
9N6Y|1|L0|A|198
9N6Y|1|L0|A|199
9N6Y|1|L0|A|200
9N6Y|1|L0|U|201

Current chains

Chain L0

5'ETS rRNA

Nearby chains

Chain SV

Regulator of rDNA transcription protein 14