HL_9N6Y_006

3D structure

PDB id

9N6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N6Y_006 not in the Motif Atlas

Geometric match to HL_9DFE_015

Geometric discrepancy: 0.1399

The information below is about HL_9DFE_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9N6Y|1|L0|C|360
9N6Y|1|L0|G|361
9N6Y|1|L0|C|362
9N6Y|1|L0|A|363
9N6Y|1|L0|A|364
9N6Y|1|L0|G|365

Current chains

Chain L0

5'ETS rRNA

Nearby chains

Chain LW

U3 small nucleolar RNA-associated protein 7