HL_9N75_015

3D structure

PDB id

9N75 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N75_015 not in the Motif Atlas

Homologous match to HL_9PN5_090

Geometric discrepancy: 0.0882

The information below is about HL_9PN5_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.4

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

9N75|1|L1|A|520
9N75|1|L1|A|521
9N75|1|L1|U|522
9N75|1|L1|G|523
9N75|1|L1|U|524
9N75|1|L1|A|525
9N75|1|L1|A|526
9N75|1|L1|A|527
9N75|1|L1|U|528
9N75|1|L1|A|529
9N75|1|L1|C|530
9N75|1|L1|C|531
9N75|1|L1|U|532

Current chains

Chain L1

18S rRNA

Nearby chains

Chain L9

40S ribosomal protein S9-A

Chain LF

40S ribosomal protein S24-A

Chain SI

Ribosome biogenesis protein BMS1