HL_9N78_014

3D structure

PDB id

9N78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SSU processome maturation and disassembly, State L

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9N78_014 not in the Motif Atlas

Geometric match to HL_9DFE_033

Geometric discrepancy: 0.3396

The information below is about HL_9DFE_033

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9N78|1|L1|C|491
9N78|1|L1|A|492
9N78|1|L1|U|493
9N78|1|L1|U|494
9N78|1|L1|C|495
9N78|1|L1|G|496

Current chains

Chain L1

18S rRNA

Nearby chains

Chain NB

Something about silencing protein 10

Chain SI

Ribosome biogenesis protein BMS1

Chain SL

rRNA-processing protein FCF1

Chain SQ

rRNA-processing protein FCF2