HL_9NJF_012

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9NJF|1|R1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_012 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0962

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9NJF|1|R1|G|410
9NJF|1|R1|G|411
9NJF|1|R1|A|412
9NJF|1|R1|C|413
9NJF|1|R1|C|414
9NJF|1|R1|A|415
9NJF|1|R1|U|416
9NJF|1|R1|C|417

Current chains

Chain R1

23S ribosomal RNA

Nearby chains