3D structure

PDB id
9NJF (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGUGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9NJF_013 not in the Motif Atlas
Homologous match to HL_4WF9_015
Geometric discrepancy: 0.0831
The information below is about HL_4WF9_015
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

9NJF|1|R1|C|462
9NJF|1|R1|G|463
9NJF|1|R1|U|464
9NJF|1|R1|G|465
9NJF|1|R1|A|466
9NJF|1|R1|G|467

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 34
50S ribosomal protein L34
Chain 4
Large ribosomal subunit protein uL4

Coloring options:


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