HL_9NJF_017

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9NJF|1|R1|A|613, 9NJF|1|R1|A|614, 9NJF|1|R1|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_017 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3086

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

9NJF|1|R1|C|611
9NJF|1|R1|G|612
9NJF|1|R1|A|613
9NJF|1|R1|A|614
9NJF|1|R1|U|615
9NJF|1|R1|A|616
9NJF|1|R1|G|617

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 4

Large ribosomal subunit protein uL4