HL_9NJF_021

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUUGAAAAA

Length

10 nucleotides

Bulged bases

9NJF|1|R1|U|747, 9NJF|1|R1|A|751, 9NJF|1|R1|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_021 not in the Motif Atlas

Homologous match to HL_7A0S_022

Geometric discrepancy: 0.1659

The information below is about HL_7A0S_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

9NJF|1|R1|U|744
9NJF|1|R1|G|745
9NJF|1|R1|U|746
9NJF|1|R1|U|747
9NJF|1|R1|G|748
9NJF|1|R1|A|749
9NJF|1|R1|A|750
9NJF|1|R1|A|751
9NJF|1|R1|A|752
9NJF|1|R1|A|753

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 22

Large ribosomal subunit protein uL22

Chain 3

50S ribosomal protein L3

Chain 32

50S ribosomal protein L32

Chain 34

50S ribosomal protein L34