HL_9NJF_024

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAUCCCGA

Length

9 nucleotides

Bulged bases

9NJF|1|R1|U|887

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9NJF_024 not in the Motif Atlas

Homologous match to HL_5J7L_158

Geometric discrepancy: 0.3255

The information below is about HL_5J7L_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NJF|1|R1|U|884
9NJF|1|R1|C|885
9NJF|1|R1|A|886
9NJF|1|R1|U|887
9NJF|1|R1|C|888
9NJF|1|R1|C|889
9NJF|1|R1|C|890
9NJF|1|R1|G|891
9NJF|1|R1|A|892

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain sm

30S ribosomal protein S13

Chain ss

30S ribosomal protein S19